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Extract and compile sefra seabird model

Source: R/sefra.R
sefra.Rd

A call to this function will source and compile the latest version of the southern hemisphere seabird risk assessment model. The model is written in stan and can be run using the sampling function from the rstan package.

Usage

sefra(
  data,
  write_to = NULL,
  read_from = NULL,
  likelihood = c("cumulative", "empirical")[1]
)

Arguments

data

A list of data inputs. See sefraData.

write_to

Write model code to file.

read_from

Read model code from file.

likelihood

Fit to either the cumulative or empirical captures.

Examples

dat <- sefraData(c('DIQ'))
#> species codes input: including all possible capture codes
#> constructed 'sefraData' object
mdl <- sefra(dat)
#> SEFRA-seabird model v2.4.0